In one scene when Teddy Parker is leaning against the door on the deck, the blood stain is wider and higher up on his cheek, in the next few second-long scenes the blood stains are blotchy and closer to his mouth.
(at around 4 mins) When Booth is trapped inside the yellow vessel he removes nuts from bolts coming from the outside to open the hatch. Gravedigger would not be able to thread nuts and washers onto the bolts from the outside of the vessel.
During the scene where LCDR Jared Booth is being taken into custody, the PO3's uniform has pin-on rank insignia where it should be sewn-on insignia of the same camouflage pattern as the uniform. Additionally, the 'U.S. NAVY" and name tapes on the uniform blouse are supposed to be the same camouflage pattern, not solid blue.
Cpl Teddy Parker's uniform is seen to have OD green name tapes and rank insignia. For the 'Chocolate Chip' desert camouflage, those patches would be a tan colored, not OD green.
When Jared Booth is in custody making the phone call to Dr. Brennan, the cell phone is being held upside down.
Agent Booth and Teddy Parker have a discussion on the merits of lock picking. Booth states that "any lock worth picking is worth kicking". In an earlier episode Booth is seen picking the lock on a door to let him and Brennan into a suspects home.
At one point Cpl. Parker says to Booth, "Yes sir, Sergeant." An Army corporal would not refer to a sergeant as "Sir."