At the top of the hour, the air transport lands at what is described as the airbase at Pt. Mugu, which is near Oxnard in Ventura County - at least 45 miles from what would be the downtown LA headquarters of CTU. But Jack and Nina arrive at CTU as the clock ticks up to 2:09 AM. No way that truck made the transfer in 8 minutes or so.
Another violation of the real-time format: It's 02:09:22 at the end of the first commercial break, when Jack and Kim embrace at CTU. Then they go to commercial, and we come back at 02:13:35 and Jack and Kim break the embrace and start talking. Apparently they hugged each other for 4 minutes?
At the end when Jack fires 3 shots to kill Nina at close range, her body is visible during the third shot and she clearly does not move or recoil.