After the surprise encounter with Blackthorn at Samhayne's house, there is a cut scene showing the Avatar being thrown in to a jail cell. After being tossed in to the cell by a wyrmguard, the Avatar knocks over a skeleton, then turns to see the guard closing the solid wooden door on him. However, once the game resumes after the cut scene, the door is *barred*, not wooden, and there is no trace of the skeleton.
When he first journeys to Paws, the Avatar meets an orphan boy who had been exiled from Britain for stealing radishes. After the Avatar restores compassion to Britain, the boy tells the Avatar that he now works and lives with the farmer he had stolen from earlier. However, when the boy tells the Avatar all this, he is still in Paws.
The Avatar claims that as long as no one is hurt, he and his companion can do as they please. This is inconsistent with the system of "Virtues" present in Britiannia ever since Ultima IV: Quest of the Avatar (1985) (championed by the Avatar himself). Many of these Virtues are not at all relevant to the question of harm--Spirituality and Humility for example.
Jennifer, who bought her friends donuts in life (as noted on her epitaph) is inexplicably buried in both the Britain and Minoc cemeteries at the same time.
There are two guards guarding the home of Cove's 'first citizen.' If the Avatar talks to either one, requesting to see the first citizen, then the guard will agree to let the Avatar in, in exchange for a $10 bribe. If the Avatar refuses this deal and then goes over to talk to the other guard, he will behave as if he was the one who had just asked for a bribe.